Pairwise fitting emdb-1559 on pdb-3j6h by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-3j6h by gmfit(PID:3849316).





RANK[1] Corr.Coeff:0.612

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-3j6h)

display:



color:


b'NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH GMPCPP-MICROTUBULE' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.612
0.593
0.591
0.589
0.570
0.569
0.567
0.565
0.564
0.560







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j6h"(PDB-format) or 
 "3j6h"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.649616,0.524329,0.550526 149.928640 center 0,0,0 model #1
move -626.429913,-382.428827,-507.671930 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!