Pairwise fitting emdb-1559 on pdb-3j48 by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-3j48 by gmfit(PID:1680409).

RANK[1] Corr.Coeff:0.517 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-3j48)
display:
color:
b'CRYO-EM STRUCTURE OF POLIOVIRUS 135S PARTICLES ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.517 0.499 0.493 0.490 0.490 0.487 0.471 0.462 0.446 0.440

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j48"(PDB-format) or "3j48"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.665388,0.507110,-0.547812 144.491464 center 0,0,0 model #1
    move -315.008175,763.139184,529.867145 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!