Pairwise fitting emdb-1559 on pdb-2c9f by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-2c9f by gmfit(PID:3997336).





RANK[1] Corr.Coeff:0.762

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-2c9f)

display:



color:


b'THE QUASI-ATOMIC MODEL OF THE ADENOVIRUS TYPE 3 PENTON DODECAHEDRON   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.762
0.748
0.746
0.743
0.741
0.738
0.737
0.731
0.714
0.712







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2c9f"(PDB-format) or 
 "2c9f"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.470841,-0.287455,0.834073 94.431806 center 0,0,0 model #1
move 644.427023,-697.152283,139.346566 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!