Pairwise fitting emdb-1559 on pdb-2akh by gmfit










Pairwise fitting of target emdb-1559 on reference pdb-2akh by gmfit(PID:4042638).





RANK[1] Corr.Coeff:0.699

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1559)

display:



color:



3D structure of human endoglin [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1559)]







REFERENCE(pdb-2akh)

display:



color:


b'NORMAL MODE-BASED FLEXIBLE FITTED COORDINATES OF A NON-TRANSLOCATING  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.699
0.680
0.665
0.658
0.655
0.650
0.649
0.645
0.594
0.582







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2akh"(PDB-format) or 
 "2akh"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1559.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.371707,0.928324,-0.006963 151.980163 center 0,0,0 model #1
move 359.872934,-129.817746,904.954483 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!