Pairwise fitting emdb-1559 on pdb-1sor by gmfit



Pairwise fitting of target emdb-1559 on reference pdb-1sor by gmfit(PID:1477791).

RANK[1] Corr.Coeff:0.319 [JSmol] [Molmil]
TARGET(emdb-1559)
display:
color:
3D structure of human endoglin [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1559)]
REFERENCE(pdb-1sor)
display:
color:
b'AQUAPORIN-0 MEMBRANE JUNCTIONS REVEAL THE STRUCTURE OF A CLOSED WATER ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.319 0.289 0.287 0.286 0.285 0.282 0.277 0.272 0.253 0.241

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1sor"(PDB-format) or "1sor"(mmCIF-format), and read it.
  2. Download the Target map "emd_1559.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.358359,-0.380606,0.852478 84.040555 center 0,0,0 model #1
    move 413.161252,-127.848807,-737.361894 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!