Pairwise fitting emdb-1446 on emdb-1305 by gmfit










Pairwise fitting of target emdb-1446 on reference emdb-1305 by gmfit(PID:4004336).





RANK[1] Corr.Coeff:0.686

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1446)

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color:



Cryo-electron tomography of Kaposi's sarcoma-associated herpesvirus capsids reveals dynamic scaffolding structures essential to capsid assembly and maturation. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1446)]







REFERENCE(emdb-1305)

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Electron cryotomography reveals the portal in the herpesvirus capsid. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.686
0.675
0.673
0.661
0.659
0.656
0.651
0.650
0.648
0.646







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1305.map.gz", and read it.

  2.  Download the Target map "emd_1446.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.045419,-0.470128,-0.881429 18.528988 center 0,0,0 model #1
move -4.225096,-7.294176,8.558175 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!