Pairwise fitting emdb-1430 on pdb-5mmi by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-5mmi by gmfit(PID:4059594).





RANK[1] Corr.Coeff:0.890

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-5mmi)

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color:


b'STRUCTURE OF THE LARGE SUBUNIT OF THE CHLOROPLAST RIBOSOME            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.890
0.736
0.722
0.717
0.715
0.705
0.701
0.701
0.697
0.696







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mmi"(PDB-format) or 
 "5mmi"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.792381,-0.241117,0.560353 133.771336 center 0,0,0 model #1
move 224.303496,225.253781,218.425904 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!