Pairwise fitting emdb-1430 on pdb-5gae by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-5gae by gmfit(PID:3696223).





RANK[1] Corr.Coeff:0.866

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-5gae)

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b'RNC IN COMPLEX WITH A TRANSLOCATING SECYEG                            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.866
0.718
0.714
0.698
0.696
0.692
0.691
0.690
0.687
0.684







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5gae"(PDB-format) or 
 "5gae"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.998041,0.056073,0.027754 173.603641 center 0,0,0 model #1
move 214.650639,221.444833,223.390100 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!