Pairwise fitting emdb-1430 on pdb-3j6b by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-3j6b by gmfit(PID:4137811).





RANK[1] Corr.Coeff:0.795

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

display:



color:



Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-3j6b)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.795
0.740
0.728
0.722
0.701
0.701
0.697
0.693
0.691
0.678







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j6b"(PDB-format) or 
 "3j6b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.151815,-0.626335,-0.764628 18.180095 center 0,0,0 model #1
move 262.099025,237.416821,247.514274 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!