Pairwise fitting emdb-1430 on pdb-3j3w by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-3j3w by gmfit(PID:3927835).





RANK[1] Corr.Coeff:0.732

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-3j3w)

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b'ATOMIC MODEL OF THE IMMATURE 50S SUBUNIT FROM BACILLUS SUBTILIS (STATE' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.732
0.716
0.690
0.682
0.678
0.664
0.664
0.658
0.656
0.636







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j3w"(PDB-format) or 
 "3j3w"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.854820,-0.507771,-0.107008 100.766590 center 0,0,0 model #1
move -1.233066,-7.098055,-26.840841 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!