Pairwise fitting emdb-1430 on pdb-3dg0 by gmfit



Pairwise fitting of target emdb-1430 on reference pdb-3dg0 by gmfit(PID:1199236).

RANK[1] Corr.Coeff:0.753 [JSmol] [Molmil]
TARGET(emdb-1430)
display:
color:
Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1430)]
REFERENCE(pdb-3dg0)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF EF-G- ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.753 0.742 0.716 0.703 0.699 0.696 0.673 0.671 0.664 0.662

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3dg0"(PDB-format) or "3dg0"(mmCIF-format), and read it.
  2. Download the Target map "emd_1430.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.850508,-0.335639,0.404948 173.262707 center 0,0,0 model #1
    move -12.464253,0.346685,-27.605608 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!