Pairwise fitting emdb-1430 on pdb-1c2w by gmfit










Pairwise fitting of target emdb-1430 on reference pdb-1c2w by gmfit(PID:3429842).





RANK[1] Corr.Coeff:0.760

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1430)

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Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1430)]







REFERENCE(pdb-1c2w)

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b'23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.760
0.646
0.611
0.608
0.606
0.600
0.597
0.585
0.582
0.580







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1c2w"(PDB-format) or 
 "1c2w"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1430.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.924128,-0.378593,-0.051529 158.483112 center 0,0,0 model #1
move 9.871629,-7.870978,-4.470468 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!