Pairwise fitting emdb-1390 on pdb-5mw1 by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-5mw1 by gmfit(PID:2358336).





RANK[1] Corr.Coeff:0.506

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-5mw1)

display:



color:


b'CRYOEM STRUCTURE OF CRENACTIN DOUBLE HELICAL FILAMENT AT 3.8A         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.506
0.496
0.475
0.468
0.333
0.322
0.321
0.309
0.251
0.247







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mw1"(PDB-format) or 
 "5mw1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.369245,-0.449902,0.813170 130.800938 center 0,0,0 model #1
move 188.121624,192.335078,206.318420 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!