Pairwise fitting emdb-1390 on pdb-4ux2 by gmfit










Pairwise fitting of target emdb-1390 on reference pdb-4ux2 by gmfit(PID:3796284).





RANK[1] Corr.Coeff:0.563

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(pdb-4ux2)

display:



color:


b'CRYO-EM STRUCTURE OF ANTAGONIST-BOUND E2P GASTRIC H,K-ATPASE          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.563
0.528
0.526
0.524
0.406
0.265
0.255
0.227
0.226
0.220







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4ux2"(PDB-format) or 
 "4ux2"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.712766,0.487987,0.503819 125.966278 center 0,0,0 model #1
move 28.759803,35.653103,-42.729580 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!