Pairwise fitting emdb-1390 on pdb-3j8i by gmfit



Pairwise fitting of target emdb-1390 on reference pdb-3j8i by gmfit(PID:1363839).

RANK[1] Corr.Coeff:0.570 [JSmol] [Molmil]
TARGET(emdb-1390)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1390)]
REFERENCE(pdb-3j8i)
display:
color:
b'NEAR-ATOMIC RESOLUTION FOR ONE STATE OF F-ACTIN ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.570 0.501 0.481 0.458 0.319 0.311 0.283 0.278 0.271 0.241

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j8i"(PDB-format) or "3j8i"(mmCIF-format), and read it.
  2. Download the Target map "emd_1390.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.992473,-0.116448,0.037924 124.213102 center 0,0,0 model #1
    move -0.088892,-0.768113,-13.205432 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!