Pairwise fitting emdb-1390 on pdb-2w4w by gmfit



Pairwise fitting of target emdb-1390 on reference pdb-2w4w by gmfit(PID:1392630).

RANK[1] Corr.Coeff:0.542 [JSmol] [Molmil]
TARGET(emdb-1390)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1390)]
REFERENCE(pdb-2w4w)
display:
color:
b'ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.542 0.451 0.441 0.438 0.387 0.386 0.370 0.280 0.245 0.236

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2w4w"(PDB-format) or "2w4w"(mmCIF-format), and read it.
  2. Download the Target map "emd_1390.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.302047,-0.191011,-0.933961 80.178399 center 0,0,0 model #1
    move -87.796542,-26.859417,73.432668 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!