Pairwise fitting emdb-1390 on emdb-5884 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-5884 by gmfit(PID:2086202).





RANK[1] Corr.Coeff:0.583

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-5884)

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Single-particle reconstruction of conformation II of GPCPP-bound and NO-bound sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.583
0.562
0.490
0.488
0.468
0.426
0.299
0.260
0.191
0.190







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5884.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.909922,0.178074,0.374608 125.923001 center 0,0,0 model #1
move 20.418621,-9.665547,15.248987 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!