Pairwise fitting emdb-1390 on emdb-2258 by gmfit



Pairwise fitting of target emdb-1390 on reference emdb-2258 by gmfit(PID:1583020).

RANK[1] Corr.Coeff:0.590 [JSmol] [Molmil]
TARGET(emdb-1390)
display:
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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1390)]
REFERENCE(emdb-2258)
display:
color:
negative stain single-particle reconstruction of conformation XI of the Ltn1 E3 ubiquitin Ligase [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.590 0.521 0.499 0.471 0.437 0.407 0.238 0.237 0.216 0.214

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2258.map.gz", and read it.
  2. Download the Target map "emd_1390.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.768382,-0.633357,0.091916 163.172765 center 0,0,0 model #1
    move 169.489902,179.244068,170.150134 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!