Pairwise fitting emdb-1390 on emdb-1773 by gmfit










Pairwise fitting of target emdb-1390 on reference emdb-1773 by gmfit(PID:3773806).





RANK[1] Corr.Coeff:0.555

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1390)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1390)]







REFERENCE(emdb-1773)

display:



color:


Perforin monomer, conformation 2 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.555
0.504
0.463
0.442
0.362
0.283
0.233
0.194
0.167
0.161







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1773.map.gz", and read it.

  2.  Download the Target map "emd_1390.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.479266,-0.818555,-0.316657 124.831540 center 0,0,0 model #1
move 132.931022,128.437797,133.320720 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!