Pairwise fitting emdb-1386 on pdb-5jlf by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-5jlf by gmfit(PID:2537538).





RANK[1] Corr.Coeff:0.570

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-5jlf)

display:



color:


b'STRUCTURE OF THE F-ACTIN-TROPOMYOSIN COMPLEX (REPROCESSED)            ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.570
0.558
0.490
0.484
0.316
0.291
0.284
0.264
0.264
0.259







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5jlf"(PDB-format) or 
 "5jlf"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.324829,0.812499,0.484078 174.217200 center 0,0,0 model #1
move 2.534768,0.626970,-1.736297 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!