Pairwise fitting emdb-1386 on pdb-3j9b by gmfit



Pairwise fitting of target emdb-1386 on reference pdb-3j9b by gmfit(PID:1471262).

RANK[1] Corr.Coeff:0.504 [JSmol] [Molmil]
TARGET(emdb-1386)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1386)]
REFERENCE(pdb-3j9b)
display:
color:
b'ELECTRON CRYO-MICROSCOPY OF AN RNA POLYMERASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.504 0.485 0.461 0.450 0.443 0.428 0.407 0.311 0.263 0.261

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j9b"(PDB-format) or "3j9b"(mmCIF-format), and read it.
  2. Download the Target map "emd_1386.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.637140,-0.491598,0.593620 147.073600 center 0,0,0 model #1
    move 172.741783,168.058389,131.912494 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!