Pairwise fitting emdb-1386 on pdb-3iya by gmfit










Pairwise fitting of target emdb-1386 on reference pdb-3iya by gmfit(PID:3870528).





RANK[1] Corr.Coeff:0.558

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(pdb-3iya)

display:



color:


b'ASSOCIATION OF THE PR PEPTIDES WITH DENGUE VIRUS BLOCKS MEMBRANE      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.558
0.512
0.508
0.467
0.334
0.324
0.323
0.251
0.201
0.180







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iya"(PDB-format) or 
 "3iya"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.655411,0.754906,0.023503 150.835714 center 0,0,0 model #1
move 27.055984,-28.615000,207.221798 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!