Pairwise fitting emdb-1386 on emdb-5880 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-5880 by gmfit(PID:3578049).





RANK[1] Corr.Coeff:0.596

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-5880)

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Single-particle reconstruction of conformation II of NO-bound sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.596
0.570
0.516
0.500
0.470
0.230
0.186
0.173
0.168
0.166







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5880.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.962456,0.081823,-0.258813 65.058038 center 0,0,0 model #1
move 27.473310,-25.280695,14.077545 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!