Pairwise fitting emdb-1386 on emdb-5872 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-5872 by gmfit(PID:2177390).





RANK[1] Corr.Coeff:0.583

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-5872)

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Single-particle reconstruction of conformation XII of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.583
0.573
0.488
0.476
0.475
0.445
0.372
0.264
0.218
0.189







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5872.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.964116,0.165484,0.207595 78.497102 center 0,0,0 model #1
move 10.754762,-16.193668,29.872356 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!