Pairwise fitting emdb-1386 on emdb-1388 by gmfit










Pairwise fitting of target emdb-1386 on reference emdb-1388 by gmfit(PID:2548859).





RANK[1] Corr.Coeff:0.918

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1386)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1386)]







REFERENCE(emdb-1388)

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color:


Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.918
0.595
0.579
0.476
0.429
0.362
0.256
0.244
0.225
0.217







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1388.map.gz", and read it.

  2.  Download the Target map "emd_1386.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.239232,-0.559290,0.793702 0.546569 center 0,0,0 model #1
move -0.072954,0.461256,-0.197917 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!