Pairwise fitting emdb-1384 on pdb-5mw1 by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-5mw1 by gmfit(PID:3604681).





RANK[1] Corr.Coeff:0.501

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-5mw1)

display:



color:


b'CRYOEM STRUCTURE OF CRENACTIN DOUBLE HELICAL FILAMENT AT 3.8A         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.501
0.477
0.473
0.462
0.334
0.329
0.326
0.299
0.270
0.253







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mw1"(PDB-format) or 
 "5mw1"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.390009,0.735268,0.554322 169.514344 center 0,0,0 model #1
move 187.950397,194.073469,200.512865 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!