Pairwise fitting emdb-1384 on pdb-5ly4 by gmfit



Pairwise fitting of target emdb-1384 on reference pdb-5ly4 by gmfit(PID:1201780).

RANK[1] Corr.Coeff:0.509 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(pdb-5ly4)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.509 0.490 0.479 0.468 0.340 0.331 0.331 0.301 0.253 0.242

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5ly4"(PDB-format) or "5ly4"(mmCIF-format), and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.355901,-0.468313,0.808713 133.284780 center 0,0,0 model #1
    move 57.783544,172.674854,324.901853 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!