Pairwise fitting emdb-1384 on pdb-4uis by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4uis by gmfit(PID:3960306).





RANK[1] Corr.Coeff:0.530

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4uis)

display:



color:


b'THE CRYOEM STRUCTURE OF HUMAN GAMMA-SECRETASE COMPLEX                 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.530
0.468
0.429
0.392
0.385
0.355
0.244
0.214
0.196
0.178







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4uis"(PDB-format) or 
 "4uis"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.483655,0.869033,-0.104206 82.506599 center 0,0,0 model #1
move 135.087961,128.215808,132.293839 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!