Pairwise fitting emdb-1384 on pdb-4c4q by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4c4q by gmfit(PID:2961990).





RANK[1] Corr.Coeff:0.508

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4c4q)

display:



color:


b'CRYO-EM MAP OF THE CSFV IRES IN COMPLEX WITH THE SMALL RIBOSOMAL 40S  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.508
0.359
0.355
0.341
0.304
0.273
0.197
0.191
0.181
0.162







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4c4q"(PDB-format) or 
 "4c4q"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.511945,0.534115,-0.672780 167.680764 center 0,0,0 model #1
move 277.493589,178.587081,280.760096 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!