Pairwise fitting emdb-1384 on pdb-4btq by gmfit



Pairwise fitting of target emdb-1384 on reference pdb-4btq by gmfit(PID:1594731).

RANK[1] Corr.Coeff:0.579 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(pdb-4btq)
display:
color:
b'COORDINATES OF THE BACTERIOPHAGE PHI6 CAPSID SUBUNITS FITTED INTO THE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.579 0.559 0.550 0.533 0.391 0.337 0.258 0.235 0.199 0.165

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4btq"(PDB-format) or "4btq"(mmCIF-format), and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.072384,-0.402173,-0.912698 156.360570 center 0,0,0 model #1
    move -51.835595,52.647581,220.477358 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!