Pairwise fitting emdb-1384 on pdb-4bom by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4bom by gmfit(PID:3212989).





RANK[1] Corr.Coeff:0.466

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4bom)

display:



color:


b'STRUCTURE OF HERPESVIRUS FUSION GLYCOPROTEIN B-BILAYER COMPLEX        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.466
0.446
0.438
0.428
0.310
0.277
0.270
0.265
0.230
0.222







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bom"(PDB-format) or 
 "4bom"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.263694,-0.863399,-0.430126 150.506610 center 0,0,0 model #1
move -2.931837,-4.448552,5.241418 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!