Pairwise fitting emdb-1384 on pdb-4a7n by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-4a7n by gmfit(PID:3625416).





RANK[1] Corr.Coeff:0.561

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-4a7n)

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b'STRUCTURE OF BARE F-ACTIN FILAMENTS OBTAINED FROM THE SAME SAMPLE AS  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.561
0.554
0.519
0.491
0.407
0.331
0.326
0.326
0.300
0.267







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4a7n"(PDB-format) or 
 "4a7n"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.221996,-0.408543,0.885331 149.348710 center 0,0,0 model #1
move 146.338333,147.803967,206.432733 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!