Pairwise fitting emdb-1384 on pdb-3mfp by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-3mfp by gmfit(PID:3427125).





RANK[1] Corr.Coeff:0.474

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-3mfp)

display:



color:


b'ATOMIC MODEL OF F-ACTIN BASED ON A 6.6 ANGSTROM RESOLUTION CRYOEM MAP ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.474
0.455
0.433
0.432
0.414
0.407
0.327
0.325
0.296
0.289







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3mfp"(PDB-format) or 
 "3mfp"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.649569,0.164575,-0.742277 151.952063 center 0,0,0 model #1
move -8.382564,11.901866,-50.809946 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!