Pairwise fitting emdb-1384 on pdb-3jd8 by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-3jd8 by gmfit(PID:3777254).





RANK[1] Corr.Coeff:0.599

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-3jd8)

display:



color:


b'CRYO-EM STRUCTURE OF THE FULL-LENGTH HUMAN NPC1 AT 4.4 ANGSTROM       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.599
0.587
0.493
0.490
0.353
0.349
0.287
0.264
0.242
0.241







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jd8"(PDB-format) or 
 "3jd8"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.191966,-0.908019,-0.372358 153.518964 center 0,0,0 model #1
move 125.574241,128.562563,160.020862 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!