Pairwise fitting emdb-1384 on pdb-3j9b by gmfit



Pairwise fitting of target emdb-1384 on reference pdb-3j9b by gmfit(PID:1477438).

RANK[1] Corr.Coeff:0.502 [JSmol] [Molmil]
TARGET(emdb-1384)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1384)]
REFERENCE(pdb-3j9b)
display:
color:
b'ELECTRON CRYO-MICROSCOPY OF AN RNA POLYMERASE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.502 0.487 0.485 0.439 0.420 0.409 0.309 0.265 0.256 0.253

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j9b"(PDB-format) or "3j9b"(mmCIF-format), and read it.
  2. Download the Target map "emd_1384.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.628343,-0.469866,0.620009 146.241945 center 0,0,0 model #1
    move 172.459261,168.642398,132.679367 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!