Pairwise fitting emdb-1384 on pdb-3a69 by gmfit










Pairwise fitting of target emdb-1384 on reference pdb-3a69 by gmfit(PID:2444382).





RANK[1] Corr.Coeff:0.461

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(pdb-3a69)

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color:


b'ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.461
0.437
0.401
0.398
0.321
0.247
0.221
0.211
0.205
0.187







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3a69"(PDB-format) or 
 "3a69"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.411574,-0.583572,-0.700036 172.636943 center 0,0,0 model #1
move -7.125981,62.626787,13.493201 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!