Pairwise fitting emdb-1384 on emdb-6231 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-6231 by gmfit(PID:3732427).





RANK[1] Corr.Coeff:0.573

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-6231)

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The export receptor Crm1 forms a dimer to promote nuclear export of HIV RNA [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.573
0.549
0.535
0.521
0.486
0.427
0.412
0.389
0.343
0.315







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6231.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.296958,0.096991,0.949952 166.548702 center 0,0,0 model #1
move 3.363305,2.596403,-3.149291 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!