Pairwise fitting emdb-1384 on emdb-5877 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-5877 by gmfit(PID:3970878).





RANK[1] Corr.Coeff:0.625

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-5877)

display:



color:


Single-particle reconstruction of conformation XVII of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.625
0.614
0.508
0.497
0.415
0.238
0.229
0.203
0.200
0.184







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5877.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.884173,0.234958,0.403774 115.860467 center 0,0,0 model #1
move 24.195599,-16.056027,18.965572 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!