Pairwise fitting emdb-1384 on emdb-5868 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-5868 by gmfit(PID:3484016).





RANK[1] Corr.Coeff:0.617

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-5868)

display:



color:


Single-particle reconstruction of conformation VIII of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.617
0.603
0.503
0.503
0.488
0.401
0.341
0.313
0.286
0.210







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5868.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.985099,-0.085585,-0.149184 60.102726 center 0,0,0 model #1
move 24.390458,-20.051687,17.822210 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!