Pairwise fitting emdb-1384 on emdb-5866 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-5866 by gmfit(PID:2321509).





RANK[1] Corr.Coeff:0.604

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

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Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-5866)

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Single-particle reconstruction of conformation VI of ligand-free sGC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.604
0.560
0.483
0.459
0.355
0.318
0.291
0.220
0.206
0.203







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5866.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.977973,0.189111,0.088350 63.207031 center 0,0,0 model #1
move 17.767040,-12.690318,18.009949 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!