Pairwise fitting emdb-1384 on emdb-1773 by gmfit










Pairwise fitting of target emdb-1384 on reference emdb-1773 by gmfit(PID:538697).





RANK[1] Corr.Coeff:0.540

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1384)

display:



color:



Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1384)]







REFERENCE(emdb-1773)

display:



color:


Perforin monomer, conformation 2 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.540
0.501
0.478
0.467
0.286
0.266
0.200
0.193
0.180
0.162







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1773.map.gz", and read it.

  2.  Download the Target map "emd_1384.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.453447,-0.823072,-0.341962 126.895004 center 0,0,0 model #1
move 132.348429,128.871315,132.948454 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!