Pairwise fitting emdb-1311 on pdb-4v71 by gmfit










Pairwise fitting of target emdb-1311 on reference pdb-4v71 by gmfit(PID:3187924).





RANK[1] Corr.Coeff:0.875

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(pdb-4v71)

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color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.875
0.733
0.720
0.710
0.707
0.696
0.686
0.677
0.666
0.666







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v71"(PDB-format) or 
 "4v71"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.798988,-0.186302,0.571760 135.819061 center 0,0,0 model #1
move 182.283135,174.577988,192.116163 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!