Pairwise fitting emdb-1311 on pdb-4v6u by gmfit










Pairwise fitting of target emdb-1311 on reference pdb-4v6u by gmfit(PID:4088427).





RANK[1] Corr.Coeff:0.859

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

display:



color:



Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(pdb-4v6u)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.859
0.727
0.709
0.708
0.701
0.699
0.694
0.689
0.680
0.664







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6u"(PDB-format) or 
 "4v6u"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.973225,-0.138167,-0.183694 2.963691 center 0,0,0 model #1
move -10.513944,-3.880950,-6.187799 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v6u)]

[Download the target GMM(emdb 1311)]

[Download gmfit result file(4088427)]