Pairwise fitting emdb-1311 on emdb-5976 by gmfit



Pairwise fitting of target emdb-1311 on reference emdb-5976 by gmfit(PID:1620469).

RANK[1] Corr.Coeff:0.868 [JSmol] [Molmil]
TARGET(emdb-1311)
display:
color:
Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1311)]
REFERENCE(emdb-5976)
display:
color:
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - 1 tRNA in rotated conformation) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.868 0.757 0.721 0.719 0.712 0.702 0.698 0.673 0.671 0.665

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5976.map.gz", and read it.
  2. Download the Target map "emd_1311.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.021609,-0.018214,0.999601 90.885484 center 0,0,0 model #1
    move 194.615675,180.709445,187.194143 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!