Pairwise fitting emdb-1311 on emdb-5141 by gmfit










Pairwise fitting of target emdb-1311 on reference emdb-5141 by gmfit(PID:4186084).





RANK[1] Corr.Coeff:0.782

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1311)

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Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1311)]







REFERENCE(emdb-5141)

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Ab initio reconstruction of the E. coli 70S ribosome complex (70S-fMet-tRNAfMet-Phe-tRNAPhe-EF-Tu-GDP-kirromycin) via the asymmetric random-model method. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.782
0.616
0.607
0.604
0.597
0.593
0.587
0.582
0.581
0.578







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5141.map.gz", and read it.

  2.  Download the Target map "emd_1311.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.692838,0.721066,0.006269 179.106838 center 0,0,0 model #1
move -1.333988,-5.442784,9.621911 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5141)]

[Download the target GMM(emdb 1311)]

[Download gmfit result file(4186084)]