Pairwise fitting emdb-1252 on pdb-5gap by gmfit



Pairwise fitting of target emdb-1252 on reference pdb-5gap by gmfit(PID:1344923).

RANK[1] Corr.Coeff:0.654 [JSmol] [Molmil]
TARGET(emdb-1252)
display:
color:
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(pdb-5gap)
display:
color:
b'BODY REGION OF THE U4/U6.U5 TRI-SNRNP ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.654 0.576 0.569 0.564 0.559 0.551 0.536 0.521 0.478 0.458

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5gap"(PDB-format) or "5gap"(mmCIF-format), and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.824330,0.450492,0.342836 153.721289 center 0,0,0 model #1
    move 452.461430,347.471042,567.475338 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!