Pairwise fitting emdb-1252 on pdb-3j6r by gmfit



Pairwise fitting of target emdb-1252 on reference pdb-3j6r by gmfit(PID:1550784).

RANK[1] Corr.Coeff:0.622 [JSmol] [Molmil]
TARGET(emdb-1252)
display:
color:
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(pdb-3j6r)
display:
color:
b'ELECTRON CRYO-MICROSCOPY OF HUMAN PAPILLOMAVIRUS TYPE 16 CAPSID ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.622 0.566 0.543 0.541 0.531 0.529 0.502 0.479 0.469 0.447

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j6r"(PDB-format) or "3j6r"(mmCIF-format), and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.187039,-0.031673,0.981842 139.179043 center 0,0,0 model #1
    move 227.714743,82.792089,153.876504 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!