Pairwise fitting emdb-1252 on pdb-3iyd by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-3iyd by gmfit(PID:3625362).





RANK[1] Corr.Coeff:0.616

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-3iyd)

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b'THREE-DIMENSIONAL EM STRUCTURE OF AN INTACT ACTIVATOR-DEPENDENT       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.616
0.581
0.555
0.549
0.532
0.510
0.500
0.494
0.490
0.469







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iyd"(PDB-format) or 
 "3iyd"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.569966,-0.816897,-0.088418 118.018297 center 0,0,0 model #1
move 256.224261,111.181779,-145.034228 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!