Pairwise fitting emdb-1252 on pdb-2xfb by gmfit



Pairwise fitting of target emdb-1252 on reference pdb-2xfb by gmfit(PID:1191037).

RANK[1] Corr.Coeff:0.541 [JSmol] [Molmil]
TARGET(emdb-1252)
display:
color:
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(pdb-2xfb)
display:
color:
b'CHIKUNGUNYA E1 E2 ENVELOPE GLYCOPROTEINS FITTED IN SINDBIS VIRUS CRYO-' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.541 0.502 0.496 0.475 0.460 0.453 0.445 0.421 0.416 0.410

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2xfb"(PDB-format) or "2xfb"(mmCIF-format), and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.700196,0.249534,-0.668924 144.634801 center 0,0,0 model #1
    move 60.352887,324.334302,439.768557 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!