Pairwise fitting emdb-1252 on pdb-2j37 by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-2j37 by gmfit(PID:4008290).





RANK[1] Corr.Coeff:0.493

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-2j37)

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b'MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS                              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.493
0.436
0.433
0.431
0.385
0.376
0.365
0.357
0.352
0.338







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2j37"(PDB-format) or 
 "2j37"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.120200,0.684566,0.718973 111.218833 center 0,0,0 model #1
move 206.661657,-269.220243,-20.307951 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!